Clinical endpoints
About
88 FinnGen traits were selected from FinnGen database (https://www.finngen.fi/en), including 11 categories, namely Cardiom-etabolic endpoints, Diseases of circulatory system, Mental and behavi-oural disorders, Diseases of the nervous systems, Diseases marked as autimmune origin, COPD and related endpoints, Interstitial lung disease endpoints, Rheuma endpoints, Diseases of the eye and adnexa, Diseases of the genitourinary system, Miscellaneous, not yet classified endpoints.
Finngen Clinical Outcomes
| phenocode | name | category | n_cases | n_controls | path_bucket |
|---|---|---|---|---|---|
| ASTHMA_MODE | Asthma (mode) | Interstitial lung disease endpoints | 32351 | 181596 | gs://finngen-public-data-r7/summary_stats/finngen_R7_ASTHMA_MODE.gz |
| AUD | Alcohol use disorder, ICD-based | V Mental and behavioural disorders (F5_) | 12662 | 296492 | gs://finngen-public-data-r7/summary_stats/finngen_R7_AUD.gz |
| AUTOIMMUNE | Autoimmune diseases | Diseases marked as autimmune origin | 76542 | 232612 | gs://finngen-public-data-r7/summary_stats/finngen_R7_AUTOIMMUNE.gz |
| COPD_HOSPITAL | COPD, hospital admissions | COPD and related endpoints | 12419 | 296735 | gs://finngen-public-data-r7/summary_stats/finngen_R7_COPD_HOSPITAL.gz |
| COX_ARTHROSIS | Coxarthrosis [arthrosis of hip](FG) | Rheuma endpoints | 16649 | 238484 | gs://finngen-public-data-r7/summary_stats/finngen_R7_COX_ARTHROSIS.gz |
| F5_ALCOHOL | Mental and behavioural disorders due to alcohol | V Mental and behavioural disorders (F5_) | 16077 | 290126 | gs://finngen-public-data-r7/summary_stats/finngen_R7_F5_ALCOHOL.gz |
| F5_ALLANXIOUS | All anxiety disorders | V Mental and behavioural disorders (F5_) | 18358 | 278818 | gs://finngen-public-data-r7/summary_stats/finngen_R7_F5_ALLANXIOUS.gz |
| F5_DEMENTIA | Dementia | V Mental and behavioural disorders (F5_) | 11602 | 294500 | gs://finngen-public-data-r7/summary_stats/finngen_R7_F5_DEMENTIA.gz |
| F5_DEMENTIA_INCLAVO | Dementia, including avohilmo | V Mental and behavioural disorders (F5_) | 25248 | 283906 | gs://finngen-public-data-r7/summary_stats/finngen_R7_F5_DEMENTIA_INCLAVO.gz |
| F5_DEPRESSIO | Depression | V Mental and behavioural disorders (F5_) | 33812 | 271380 | gs://finngen-public-data-r7/summary_stats/finngen_R7_F5_DEPRESSIO.gz |
| F5_MOOD | Mood [affective] disorders | V Mental and behavioural disorders (F5_) | 37774 | 271380 | gs://finngen-public-data-r7/summary_stats/finngen_R7_F5_MOOD.gz |
| F5_NEUROTIC | Neurotic, stress-related and somatoform disorders | V Mental and behavioural disorders (F5_) | 30336 | 278818 | gs://finngen-public-data-r7/summary_stats/finngen_R7_F5_NEUROTIC.gz |
| F5_PSYCH | Psychiatric diseases | V Mental and behavioural disorders (F5_) | 79207 | 229947 | gs://finngen-public-data-r7/summary_stats/finngen_R7_F5_PSYCH.gz |
| F5_SCHIZO | Schizophrenia, schizotypal and delusional disorders | V Mental and behavioural disorders (F5_) | 11658 | 297496 | gs://finngen-public-data-r7/summary_stats/finngen_R7_F5_SCHIZO.gz |
| F5_SUBSTANCE | Mental and behavioural disorders due to psychoctive substance use | V Mental and behavioural disorders (F5_) | 19028 | 290126 | gs://finngen-public-data-r7/summary_stats/finngen_R7_F5_SUBSTANCE.gz |
| F5_UNSMENDIS | Unspecified mental disorder | V Mental and behavioural disorders (F5_) | 14205 | 294949 | gs://finngen-public-data-r7/summary_stats/finngen_R7_F5_UNSMENDIS.gz |
| FG_DISVEINLYMPH | Diseases of veins, lymphatic vessels and lymph nodes, not elsewhere classified (FINNGEN) | Cardiometabolic endpoints | 36246 | 156457 | gs://finngen-public-data-r7/summary_stats/finngen_R7_FG_DISVEINLYMPH.gz |
| FG_HYPERTENSION | Hypertensive diseases (excluding secondary) | Cardiometabolic endpoints | 85491 | 156457 | gs://finngen-public-data-r7/summary_stats/finngen_R7_FG_HYPERTENSION.gz |
| FG_OTHHEART | Other heart diseases | Cardiometabolic endpoints | 84118 | 156457 | gs://finngen-public-data-r7/summary_stats/finngen_R7_FG_OTHHEART.gz |
| FG_PULMHEART | Pulmonary heart disease | Cardiometabolic endpoints | 6753 | 302401 | gs://finngen-public-data-r7/summary_stats/finngen_R7_FG_PULMHEART.gz |
| G6_AD_WIDE | Alzheimer’s disease, wide definition | VI Diseases of the nervous system (G6_) | 9271 | 299883 | gs://finngen-public-data-r7/summary_stats/finngen_R7_G6_AD_WIDE.gz |
| G6_ALZHEIMER | Alzheimer disease | VI Diseases of the nervous system (G6_) | 6281 | 302873 | gs://finngen-public-data-r7/summary_stats/finngen_R7_G6_ALZHEIMER.gz |
| G6_ALZHEIMER_INCLAVO | Alzheimer disease, including avohilmo | VI Diseases of the nervous system (G6_) | 7803 | 301351 | gs://finngen-public-data-r7/summary_stats/finngen_R7_G6_ALZHEIMER_INCLAVO.gz |
| G6_CARPTU | Carpal tunnel syndrome | VI Diseases of the nervous system (G6_) | 17198 | 273097 | gs://finngen-public-data-r7/summary_stats/finngen_R7_G6_CARPTU.gz |
| G6_EPIPAROX | Episodal and paroxysmal disorders | VI Diseases of the nervous system (G6_) | 65651 | 243503 | gs://finngen-public-data-r7/summary_stats/finngen_R7_G6_EPIPAROX.gz |
| G6_EPLEPSY | Epilepsy | VI Diseases of the nervous system (G6_) | 8523 | 243503 | gs://finngen-public-data-r7/summary_stats/finngen_R7_G6_EPLEPSY.gz |
| G6_MIGRAINE | Migraine | VI Diseases of the nervous system (G6_) | 13465 | 243503 | gs://finngen-public-data-r7/summary_stats/finngen_R7_G6_MIGRAINE.gz |
| G6_NERPLEX | Nerve, nerve root and plexus disorders | VI Diseases of the nervous system (G6_) | 36057 | 273097 | gs://finngen-public-data-r7/summary_stats/finngen_R7_G6_NERPLEX.gz |
| G6_NEURO | Neurological diseases | VI Diseases of the nervous system (G6_) | 106629 | 202525 | gs://finngen-public-data-r7/summary_stats/finngen_R7_G6_NEURO.gz |
| G6_NEURODEG | Other degenerative diseases of the nervous system | VI Diseases of the nervous system (G6_) | 7288 | 301866 | gs://finngen-public-data-r7/summary_stats/finngen_R7_G6_NEURODEG.gz |
| G6_SLEEPAPNO | Sleep apnoea | VI Diseases of the nervous system (G6_) | 27207 | 280720 | gs://finngen-public-data-r7/summary_stats/finngen_R7_G6_SLEEPAPNO.gz |
| G6_SLEEPAPNO_INCLAVO | Sleep apnoea, including avohilmo | VI Diseases of the nervous system (G6_) | 29035 | 280119 | gs://finngen-public-data-r7/summary_stats/finngen_R7_G6_SLEEPAPNO_INCLAVO.gz |
| G6_TIA | Transient ischemic attack | VI Diseases of the nervous system (G6_) | 13790 | 288919 | gs://finngen-public-data-r7/summary_stats/finngen_R7_G6_TIA.gz |
| H7_ALLERGICCONJUNCTIVITIS | Allergic conjunctivitis | VII Diseases of the eye and adnexa (H7_) | 15567 | 293587 | gs://finngen-public-data-r7/summary_stats/finngen_R7_H7_ALLERGICCONJUNCTIVITIS.gz |
| H7_CATARACTSENILE | Senile cataract | VII Diseases of the eye and adnexa (H7_) | 42843 | 262698 | gs://finngen-public-data-r7/summary_stats/finngen_R7_H7_CATARACTSENILE.gz |
| H7_CHOROIDRETINA | Disorders of choroid and retina | VII Diseases of the eye and adnexa (H7_) | 24328 | 284826 | gs://finngen-public-data-r7/summary_stats/finngen_R7_H7_CHOROIDRETINA.gz |
| H7_CONJUNCTIVITIS | Conjunctivitis | VII Diseases of the eye and adnexa (H7_) | 21602 | 285087 | gs://finngen-public-data-r7/summary_stats/finngen_R7_H7_CONJUNCTIVITIS.gz |
| H7_EYE | Diseases of the eye and adnexa | VII Diseases of the eye and adnexa (H7_) | 115859 | 193295 | gs://finngen-public-data-r7/summary_stats/finngen_R7_H7_EYE.gz |
| H7_GLAUCOMA | Glaucoma | VII Diseases of the eye and adnexa (H7_) | 13614 | 295540 | gs://finngen-public-data-r7/summary_stats/finngen_R7_H7_GLAUCOMA.gz |
| H7_LENS | Disorders of lens | VII Diseases of the eye and adnexa (H7_) | 46456 | 262698 | gs://finngen-public-data-r7/summary_stats/finngen_R7_H7_LENS.gz |
| H7_LIDLACRIMALORBIT | Disorders of eyelid, lacrimal system and orbit | VII Diseases of the eye and adnexa (H7_) | 24125 | 285029 | gs://finngen-public-data-r7/summary_stats/finngen_R7_H7_LIDLACRIMALORBIT.gz |
| H7_MACULADEGEN | Degeneration of macula and posterior pole | VII Diseases of the eye and adnexa (H7_) | 10603 | 284826 | gs://finngen-public-data-r7/summary_stats/finngen_R7_H7_MACULADEGEN.gz |
| H7_OCUMUSCLE | Disorders of ocular muscles, binocular movement, accommodation and refraction | VII Diseases of the eye and adnexa (H7_) | 11812 | 297342 | gs://finngen-public-data-r7/summary_stats/finngen_R7_H7_OCUMUSCLE.gz |
| H7_SCLERACORNEA | Disorders of sclera, cornea, iris and ciliary body | VII Diseases of the eye and adnexa (H7_) | 14640 | 294514 | gs://finngen-public-data-r7/summary_stats/finngen_R7_H7_SCLERACORNEA.gz |
| H7_VITREOUS | Disorders of vitreous body and globe | VII Diseases of the eye and adnexa (H7_) | 11265 | 297889 | gs://finngen-public-data-r7/summary_stats/finngen_R7_H7_VITREOUS.gz |
| I9_AF | Atrial fibrillation and flutter | IX Diseases of the circulatory system (I9_) | 34748 | 156457 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_AF.gz |
| I9_ANGINA | Angina pectoris | IX Diseases of the circulatory system (I9_) | 27046 | 260124 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_ANGINA.gz |
| I9_ANGIO | Coronary angiopasty | IX Diseases of the circulatory system (I9_) | 12553 | 260124 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_ANGIO.gz |
| I9_AORTANEUR | Aortic aneurysm | IX Diseases of the circulatory system (I9_) | 6092 | 288638 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_AORTANEUR.gz |
| I9_ATHSCLE | Atherosclerosis, excluding cerebral, coronary and PAD | IX Diseases of the circulatory system (I9_) | 11189 | 288638 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_ATHSCLE.gz |
| I9_CEREBVASC | Cerebrovascular diseases | IX Diseases of the circulatory system (I9_) | 24990 | 284164 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_CEREBVASC.gz |
| I9_CHD | Major coronary heart disease event | IX Diseases of the circulatory system (I9_) | 33628 | 275526 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_CHD.gz |
| I9_CORATHER | Coronary atherosclerosis | IX Diseases of the circulatory system (I9_) | 36418 | 260124 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_CORATHER.gz |
| I9_CVD | Cardiovascular diseases | IX Diseases of the circulatory system (I9_) | 166137 | 143017 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_CVD.gz |
| I9_CVD_HARD | Hard cardiovascular diseases | Cardiometabolic endpoints | 46706 | 262448 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_CVD_HARD.gz |
| I9_DISVEINLYMPH | Diseases of veins, lymphatic vessels and lymph nodes, not elsewhere classified | IX Diseases of the circulatory system (I9_) | 42064 | 267090 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_DISVEINLYMPH.gz |
| I9_DOAAC | Diseases of arteries, arterioles and capillaries | IX Diseases of the circulatory system (I9_) | 20516 | 288638 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_DOAAC.gz |
| I9_DVTANDPULM | DVT of lower extremities and pulmonary embolism | IX Diseases of the circulatory system (I9_) | 12559 | 296595 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_DVTANDPULM.gz |
| I9_HEARTFAIL | Heart failure,strict | IX Diseases of the circulatory system (I9_) | 19676 | 272371 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_HEARTFAIL.gz |
| I9_HEARTFAIL_AND_ANTIHYPERT | Heart failure and antihypertensive medication | Cardiometabolic endpoints | 18650 | 150798 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_HEARTFAIL_AND_ANTIHYPERT.gz |
| I9_HEARTFAIL_AND_OVERWEIGHT | Heart failure and bmi 25plus | Cardiometabolic endpoints | 12397 | 129190 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_HEARTFAIL_AND_OVERWEIGHT.gz |
| I9_HYPTENS | Hypertension | IX Diseases of the circulatory system (I9_) | 85438 | 223663 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_HYPTENS.gz |
| I9_ISCHHEART | Ischemic heart diseases | IX Diseases of the circulatory system (I9_) | 49030 | 260124 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_ISCHHEART.gz |
| I9_MI | Myocardial infarction | IX Diseases of the circulatory system (I9_) | 20404 | 260124 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_MI.gz |
| I9_PAD | Peripheral artery disease | IX Diseases of the circulatory system (I9_) | 11924 | 288638 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_PAD.gz |
| I9_STR_SAH | Stroke, including SAH | IX Diseases of the circulatory system (I9_) | 20029 | 280171 | gs://finngen-public-data-r7/summary_stats/finngen_R7_I9_STR_SAH.gz |
| KNEE_ARTHROSIS | Gonarthrosis [arthrosis of knee](FG) | Rheuma endpoints | 34417 | 238484 | gs://finngen-public-data-r7/summary_stats/finngen_R7_KNEE_ARTHROSIS.gz |
| N14_BREAST | Disorders of breast | XIV Diseases of the genitourinary system (N14_) | 12936 | 160810 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_BREAST.gz |
| N14_CHRONKIDNEYDIS | Chronic kidney disease | XIV Diseases of the genitourinary system (N14_) | 6604 | 299094 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_CHRONKIDNEYDIS.gz |
| N14_CYSTITIS | Cystitis | XIV Diseases of the genitourinary system (N14_) | 12906 | 272433 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_CYSTITIS.gz |
| N14_ENDOMETRIOSIS | Endometriosis | XIV Diseases of the genitourinary system (N14_) | 12056 | 94394 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_ENDOMETRIOSIS.gz |
| N14_FEMALEGENINF | Inflammatory diseases of female pelvic organs | XIV Diseases of the genitourinary system (N14_) | 17022 | 156724 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_FEMALEGENINF.gz |
| N14_FEMALEGENNONINF | Noninflammatory disorders of female genital tract | XIV Diseases of the genitourinary system (N14_) | 79352 | 94394 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_FEMALEGENNONINF.gz |
| N14_FEMGENPROL | Female genital prolapse | XIV Diseases of the genitourinary system (N14_) | 13420 | 94394 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_FEMGENPROL.gz |
| N14_GENITOURINARY | Genitourinary diseases | XIV Diseases of the genitourinary system (N14_) | 152751 | 156403 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_GENITOURINARY.gz |
| N14_MALEGEN | Diseases of male genital organs | XIV Diseases of the genitourinary system (N14_) | 35358 | 100050 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_MALEGEN.gz |
| N14_MENORRHAGIA | Menorrhagia | XIV Diseases of the genitourinary system (N14_) | 17048 | 94394 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_MENORRHAGIA.gz |
| N14_MENSIRREG | Irregular menses | XIV Diseases of the genitourinary system (N14_) | 13001 | 148629 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_MENSIRREG.gz |
| N14_MESNRUIRREG | Excessive, freguent and irrelgular menstruation | XIV Diseases of the genitourinary system (N14_) | 28673 | 94394 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_MESNRUIRREG.gz |
| N14_OVARYCYST | Ovarian cyst | XIV Diseases of the genitourinary system (N14_) | 16119 | 94394 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_OVARYCYST.gz |
| N14_POLYPFEMGEN | Polyp of the female genital tract | XIV Diseases of the genitourinary system (N14_) | 11092 | 94394 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_POLYPFEMGEN.gz |
| N14_PROSTHYPERPLA | Hyperplasia of prostate | XIV Diseases of the genitourinary system (N14_) | 22091 | 100050 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_PROSTHYPERPLA.gz |
| N14_PYELONEPHR | Acute tubulo-interstitial nephritis | XIV Diseases of the genitourinary system (N14_) | 17497 | 281036 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_PYELONEPHR.gz |
| N14_RENALTUB | Renal tubulo-intestitial diseases | XIV Diseases of the genitourinary system (N14_) | 28118 | 281036 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_RENALTUB.gz |
| N14_RENFAIL | Renal failure | XIV Diseases of the genitourinary system (N14_) | 10060 | 299094 | gs://finngen-public-data-r7/summary_stats/finngen_R7_N14_RENFAIL.gz |
| PAIN | Pain (limb, back, neck, head abdominally) | Miscellaneous, not yet classified endpoints | 131493 | 177045 | gs://finngen-public-data-r7/summary_stats/finngen_R7_PAIN.gz |
| RHEUMA_ENDPOINTS | Finngen Rheumatological endpoints | Rheuma endpoints | 70670 | 238484 | gs://finngen-public-data-r7/summary_stats/finngen_R7_RHEUMA_ENDPOINTS.gz |
| RX_STATIN | Statin medication | IX Diseases of the circulatory system (I9_) | 100639 | 208515 | gs://finngen-public-data-r7/summary_stats/finngen_R7_RX_STATIN.gz |